📄 ResLysEmbed Accepted in Bioinformatics Advances
Our paper on ResLysEmbed has been accepted for publication in Bioinformatics Advances.
I am Souvik Ghosh, a PhD student in Computer Science at Vanderbilt University, where I also work as a Graduate Research Assistant. Previously, I served as a Lecturer in the Department of Computer Science and Engineering at BRAC University and completed my undergraduate studies in CSE at BUET. My research interests span bioinformatics—particularly proteomics and structural bioinformatics—as well as machine learning and multimodal AI. I am driven by the pursuit of developing novel computational and machine learning approaches to address complex biological and real-world problems, aiming to contribute to both scientific knowledge and practical applications.
PhD in Computer Science
Vanderbilt University
BSc. in Computer Science and Engineering
Bangladesh University of Engineering and Technology
HSC
Dhaka College
SSC
Dhanmondi Govt. Boys' High School
I am Souvik Ghosh, a PhD student in Computer Science and Graduate Research Assistant at Vanderbilt University. I completed my undergraduate studies in CSE at BUET and previously served as a Lecturer at BRAC University. I am passionate about applying machine learning and deep learning to solve impactful problems in computational biology and beyond. My undergraduate thesis focused on post-translational modification prediction, where I developed ResLysEmbed, a ResNet-based framework that integrates sequence data and protein language model embeddings to achieve state-of-the-art results in succinylation site prediction.
Beyond bioinformatics, I have explored deepfake detection using generative models and advanced vision architectures, as well as multimodal learning for cancer prognosis prediction, combining genomic and clinical data. My broader research interests span LLMs, generative models, and multimodal AI, with a strong motivation to bridge computational methods and biological insights.
I aspire to continue advancing AI-driven solutions in healthcare and scientific discovery while collaborating across disciplines to push research frontiers. 😃
Our paper on ResLysEmbed has been accepted for publication in Bioinformatics Advances.
Started my journey as a full-time lecturer in the Department of Computer Science and Engineering at BRAC University.
Our team ‘Straw Hats’ secured the 1st runner-up position at IEEE SP Cup 2025 with our work on DFCon for deepfake detection.
Officially graduated from BUET with a CGPA of 3.85.
Successfully defended my undergraduate thesis on ResLysEmbed, a ResNet-based framework for lysine succinylation site prediction.